There's always a risk I guess, just be gentle and take your time. I don't think you're likely to break any latches if you make sure you go all the way around and heard it pop everywhere. Don't try to pull it out if you only have it half open.
Why do you want to take the magnets out?
Just next to where the EDL pads are there's a speaker (which has a magnet) so putting a reed switch there might not be the best idea. Are there any more magnets in there which are not the speakers?
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